Investigación / Research




Articles / Artículos


  1. Florencio Balboa Usabiaga and Daniel Duque “Applications of computational geometry to the molecular simulation of interfaces” Phys. Rev. E 79, 046709 (2009)

  2. Daniel Duque, Pedro Tarazona, and Enrique Chacón "Diffusion at the liquid-vapor interface", Journal of Chemical Physics 128 134704 (2008)

  3. Daniel Duque, Brian K. Peterson, and Lourdes F. Vega "Interaction between coated graphite nanoparticles by molecular simulation", Journal of Physical Chemistry C 111 12328-12334 (2007)

  4. Aurelio Olivet, Daniel Duque, and Lourdes F. Vega "Analysis of electron interactions in dielectric gases", Journal of Applied Physics 101 023308 (2007)

  5. Daniel Duque D and Lourdes F. Vega " Calculation of the force between surfaces coated with grafted molecules by molecular simulation" Journal of Chemical Physics 124 034703 (2006)

  6. Aurelio Olivet, and Daniel Duque, and Lourdes F. Vega "Sulfur hexafluoride's liquid-vapor coexistence curve, interfacial properties, and diffusion coefficients as predicted by a simple rigid model" Journal of Chemical Physics 123 194508 (2005)

  7. Andrés Mejía, Josep C. Pàmies, Daniel Duque, Hugo Segura H, and Lourdes F. Vega " Phase and interface behaviors in type-I and type-V Lennard-Jones mixtures: Theory and simulations" Journal of Chemical Physics 123 034505 (2005)

  8. Daniel Duque, Josep C. Pàmies, and Lourdes F. Vega "Interfacial properties of Lennard-Jones chains by direct simulation and density gradient theory" Journal of Chemical Physics 121 11395-11401 (2004)

  9. Daniel Duque and Lourdes F. Vega "Some issues on the calculation of interfacial properties by molecular simulation" Journal of Chemical Physics 121 8611-8617 (2004)

  10. Daniel Duque "Theory of copolymer micellization" Journal of Chemical Physics 119 5701-5704 (2003)

  11. Daniel Duque, Kirill Katsov, and Michael Schick "Theory of T junctions and symmetric tilt grain boundaries in pure and mixed polymer systems" Journal of Chemical Physics 117 10315-10320 (2002)

  12. Daniel Duque, Xiao-jun Li, Kirill Katsov, and Michael Schick "Molecular theory of hydrophobic mismatch between lipids and peptides" Journal of Chemical Physics 116 10478-10484 (2002)

  13. Daniel Duque "Comment on 'Spin-1 aggregation model in one dimension' " Physical Review E 64 063601 (2001)

  14. Pedro Tarazona, Daniel Duque, and Enrique Chacón " Aggregation models at high packing fraction" Physical Review E 62 7147-7154 (2000)

  15. Daniel Duque D and Michael Schick " Self-consistent field theory of twist grain boundaries in block copolymers" Journal of Chemical Physics 113 5525-5530 (2000)

  16. Daniel Duque, Pedro Tarazona, and Enrique Chacón "Microscopic Model for Mixed Surfactant Vesicles" Langmuir 14(24) 6827–6834 (1998)

  17. Daniel Duque and Pedro Tarazona " Exact results and mean field approximation for a model of molecular aggregation" Journal of Chemical Physics 107 10207 (1997)





Research interests, in brief

Physics is successful at explaning things at the microscopic scale (molecules and below), and also at the macroscopic scale (larger than a micron or so.) The connection between the two is, however, tricky. This field is historically known as statistical mechanics. It used to be purely theoretical, but has lately been reinforced by computer simulation. I have been working in the application of this techniques to a variety of problems in biological physics, polymer physics, aggregation, interfaces, and material science. Some details follow; in the future, I plan to write more in detail about some of them.


Research interests, in more detail



biological physics

This started with my PhD at Dept. de Física Teórica de la Materia Condensada (UAM) under Pedro Tarazona (ftmc, UAM), and Enrique Chacón (ICMM-CSIC) (PhD title was Physics of amphiphile aggregates).

Many biological molecules are amphiphilic (or, amphipathic): one of its ends is hydrophobic, while the other is hydrophilic. The presence of these opposing tendencies result in the formation of many interesting supramolecular assemblies. The chief example in biology are phospholipids, the main ingredient in animal's cell walls. During my PhD, we studied simple models for this kind of molecules. The framework was taken from liquid state theory; basically, density functional theory. The aggregate most important in biology is the bilayer membrane, either flat or closed; this is what cell walls are (plus many other molecules, mainly proteins, whose purpose is functional rather than structural.) [1998] Other interesting aggregate is the micelle (see below).

Later, I came across biological membranes again. This time, it was from polymer physics (see below),

polymer physics

Michael Schick, at the Dep. of Physics, University of Washington in Seattle, Washington, USA is well known in the field of polymer physics (among others). Since then, I have been working with the so-called SCFT (self consistent field theory), which is just plain mean field applied to polymer physics.

Diblock copolymers are polymers with two parts, made with two monomers whose mixture would segregate. (Notice analogy with amphiphilic molecules above.) SCFT successfully explains the structures that a melt of this copolymers forms. We first worked in explaining the beautiful structures that may form at the boundary between two ordered domains. In particular, twist grain boundaries, which have been compared to a minimal surface called Scherk's first surface. We also studied other boundaries called T junctions. [2000, 2002]

Later, we applied the same theory to a model of... phospholipids again. We studied the insertion of a short protein across the membrane. Membrane proteins are recognized to be hugely important, but difficult to study experimentally. [2002]

I also returned to micelles (below).

micelles

Amphiphilic molecules can form other kinds of aggregates. In some cases (intuitively, when their hydrophilic "head" is larger than their hydrophobic "tails") they may form micelles. These aggregates are interesting because they have a well-defined size. Think about forming a ball with thumbtacks: too few and you will see their points, too many and the interior will be hollow. There are some simple models that are exactly solvable and show this behavior. I studied some of them during my PhD thesis, and then a similar one came about later. [1997, 2001]

Then, a mixture of an A-B copolymer and B homopolymer can form these structures too, if the A part is smaller. I have also studied this mixture. [1998]

interfaces

This subject has a long history. When two phases of a substance are in coexistence (think water and its vapor in a jar), there should be some structure to the boundary between the phases (called the interface). Also, there is an energy cost to the formation of the interface, measured in energy per area, called the interfacial tension (if one of the phases is a vapor, this is the famous surface tension.) Like in the other cases, theory and simulation have provided much information about this subject.

When I arrived in Barcelona, to work Dr. Lourdes Vega (Molecular Simulation Group, ICMAB-CSIC), we performed simulation work on interfaces of short linear chains. The results were compared with the predictions from a theory called soft-SAFT (from the SAFT family). This work has been extended to binary mixtures with Drs. Andrés Mejía and Hugo Segura, from Chile. The phase coexistence of SF
6 (see below) has also been studied by Aurelio Olivet. [2004a, 2004b, 2005a, 2005b].

The most recent work in this area is related to the dynamics of the gas/liquid interface [2008]. Some proposals concerning its determination and structure have also been put forward (see this introductory page to the subject, and some info about our recent proposal).

materials science

Colloids are pieces of material small enough that the usual techniques of statistical mechanics can be applied to them. Its interaction is usually attractive at large distances, which causes the particles to fuse (this has the interesting name of flocculation). Often, the opposite is needed, in order to obtain a suspension. Traditionally, a repulsion can be induced by charging the particles. Another means is to anchor molecules to the surface. We have studied the resulting forces in these systems. [2006, 2007]

dielectrics

This is a very recent line of work. The idea is to make progress in understanding and predicting what makes a substance a good gas insulator. The most well known gases are N2 , cheap and not very good, and SF6, artificial gas with exceptional performance. [2007]






© Daniel Duque 2009